Viral Junk

Rachel Vaughn

130_vaughn_01

Lyuba Mammoth, c. 44,000 BC. Lyuba (the Russian word for "love") is the most complete mammoth specimen ever found, and the most studied by researchers. License: CC BY 2.0. 

Issue #130
October 2022










Notes
1

Zoe Todd, “Weaponized Fossil Kin and the Alberta Economy,” Speculative Fish-Ctions (blog), January 19, 2021 .

2

Quoted in University of Colorado at Boulder, “Remnants of Ancient Parasites Could Be Shaping Our Response to the COVID-19 Coronavirus,” SciTechDaily, October 18, 2020 .

3

Todd, “Weaponized Fossil Kin.”

4

Eben Kirksey, “Virology,” in Unknown Unknowns: An Introduction to Mysteries, ed. Emanuele Coccia (Triennale Milano XXIII, 2022). Exhibition catalog.

5

A. G. Cobián Güemes et al., “Viruses as Winners in the Game of Life,” Annual Review of Virology 3, no. 1 (2016).

6

Charlotte Brives, “Pluribiosis and the Never-Ending Microgeohistories,” With Microbes, ed. C. Brives et al. (Mattering Press, 2021). See also Heather Paxson, “Post-Pasteurian Cultures: The Microbiopolitics of Raw-Milk Cheese in the United States,” Cultural Anthropology 23, no. 1 (2008).

7

John Dupré and Stephan Guttinger, “Viruses as Living Processes,” Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, no. 59 (2016); and Stephen Guttinger, “A Virus Is Not a Thing, Part 1: The Case for a Process View of Viruses,” Philosophy Blog, London School of Economics, July 6, 2020 .

8

Celia Lowe, “Viral Clouds: Becoming H5N1 in Indonesia,” Cultural Anthropology 25, no. 4 (2010).

9

Kirksey, “Virology.”

10

Nessa Carey, Junk DNA: A Journey Through the Dark Matter of the Genome (Columbia University Press, 2015).

11

Jake Buehler, “The Complex Truth About ‘Junk DNA,’” Quanta Magazine, September 1, 2021 .

12

S. Ohno, “So Much ‘Junk’ DNA in Our Genome,” Brookhaven Symposium in Biology, no. 23 (1972).

13

Quoted in “Is Most of Your DNA Junk?” The Stem Cell Channel, May 24, 2019. YouTube video . See also Richard Dawkins, The Selfish Gene (Oxford University Press, 1976).

14

Lisa Doeland, “At Home in an Unhomely World: On Living with Waste,” Detritus: Multidisciplinary Journal for Waste Resources and Residues, no. 6 (2019).

15

See for instance Bob Kuska, “Should Scientists Scrap the Notion of Junk DNA?” JNCI: Journal of the National Cancer Institute 90, no. 14 (1998); Nelson Fagundes et al., “What We Talk About When We Talk About ‘Junk DNA.’” Genome Biology and Evolution, no. 14 (2022); Sean R. Eddy, “The ENCODE Project: Missteps Overshadowing a Success,” Current Biology 23, no. 7 (2013); Guillaume Bourque et al., “Ten Things You Should Know About Transposable Elements,” Genome Biology 19, no. 1 (2018).

16

Carrie Arnold, “The Non-Human Living Inside of You,” Nautilus, January 9, 2020.

17

See University of Colorado at Boulder, “Remnants of Ancient Parasites.” See also Damien J. Downes et al., “Identification of LZTFL1 as a Candidate Effector Gene at a COVID-19 Risk Locus,” Nature Genetics 53, no. 11 (2021).

18

N. Grandi and E. Tramontano, “Human Endogenous Retroviruses Are Ancient Acquired Elements Still Shaping Innate Immune Responses.” Frontiers in Immunology, no. 9 (2018).

19

Max Liboiron and Joshua Lepawsky, Discard Studies: Wasting, Systems and Power (MIT Press, 2022).

20

Michelle Murphy, “Alterlife and Decolonial Chemical Relations,” Cultural Anthropology 32, no. 4 (2017).

21

Doeland, “At Home in an Unhomely World.”

22

A. E. Gorbalenya, “Could We Live in Peace with Viruses?” keynote, Leiden University Medical Center, 2011 .

23

Emily Henderson, “Study Highlights the Critical Role of Junk DNA in Mammalian Development,” News-Medical, October 19, 2021 .

24

C.A. Buttler and E. B. Chuong, “Emerging Roles for Endogenous Retroviruses in Immune Epigenetic Regulation,” Immunological Reviews 305, no. 1 (2022).

25

Alexander D. Ramos et al., “Integration of Genome-Wide Approaches Identifies lncRNAs of Adult Neural Stem Cells and Their Progeny In Vivo,” Cell Stem Cell 12, no. 5, (2013); Wei et al, “ADRAM Is an Experience-Dependent Long Noncoding RNA that Drives Fear Extinction Through a Direct Interaction with the Chaperone Protein 14-3-3,” Cell Reports 38, no. 12 (2022).

26

Federica Marasca et al., “LINE1 Are Spliced in Non-canonical Transcript Variants to Regulate T Cell Quiescence and Exhaustion,” Nature Genetics 54, no. 2 (2022).

27

Madhav Jagannathan et al., “A Conserved Function for Pericentromeric Satellite DNA,” eLife, no. 7 (2018). See also Molly Campbell, “Scientists Identify the Gene that Doubles Covid-19 Risk,” Technology Networks: Genomics Research, November 8, 2021 .

28

Christie Wilcox, “Adapting with a Little Help from Jumping Genes,” The Scientist, no. 2 (January 2022) . On transposons as selfish, see for example Lu Wang et al., “Hijacking Oogenesis Enables Massive Propagation of LINE & Retroviral Transposons,” Cell 174, no. 5 (2018).

29

Quoted in “Is Most of Your DNA Junk?”

30

A. Luganini and G. Gribaudo, “Retroviruses of the Human Virobiota: The Recycling of Viral Genes and the Resulting Advantages for Human Hosts During Evolution,” Frontiers in Microbiology, May 28, 2020 .

31

Martine Lappé and Hannah Landecker, “How the Genome Got a Life Span,” New Genetics and Society 34, no. 2 (2015).

32

Brives, “Pluribiosis and the Never-Ending Microgeohistories.”







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